Sexual Assault and STI Prophylaxis — What Happens at the ER

If you've experienced sexual assault, there's a specific medical protocol — STI prophylaxis, HIV PEP, emergency contraception, evidence collection if you choose. The system is designed to handle this without you having to explain everything. Most ERs have specialized SANE (Sexual Assault Nurse Examiner) programs.

This guide is for those who need information now — or for those supporting someone who does.

Resources for immediate support:

  • RAINN (Rape, Abuse & Incest National Network): 1-800-656-HOPE (4673) or chat at rainn.org
  • National Domestic Violence Hotline: 1-800-799-7233
  • The Trevor Project (LGBTQ+): 1-866-488-7386

The short answer

After sexual assault, the medical workup typically includes:

Need Standard prophylaxis Timing
HIV PEP (28-day antiretroviral course) Within 72 hours
Gonorrhea + chlamydia Ceftriaxone + doxycycline OR azithromycin At ER visit
Trichomoniasis Metronidazole At ER visit
Hepatitis B HBIG + vaccine if not immune Within 14 days
Pregnancy prevention Plan B or Ella Within 72-120 hours
STI follow-up testing Window-period appropriate 2 weeks - 3 months
Mental health Crisis support, referral Same day + ongoing
Evidence collection "Rape kit" if you want to preserve options Up to 7-10 days
HSV / HPV Not routinely prophylactic; testing offered later Various

Going to the ER after assault

What to bring (if possible)

  • ID
  • Insurance (if available; not required)
  • The clothes you were wearing (if you can bring them — useful for evidence collection if you decide later)
  • A trusted friend or family member if possible

What you DON'T need to do

  • Don't shower, change clothes, or use the bathroom if you can avoid it — preserves evidence options
  • Don't feel pressure to report to police — separate decision from medical care
  • Don't have to identify the assailant
  • Don't have to make any decisions immediately

What happens at triage

  • You'll be brought to a private area quickly
  • A SANE nurse or trained provider will see you
  • Pace is set by you — you can pause anytime
  • Anyone you bring can stay or wait outside per your preference

The exam

  • Optional — you can decline any part
  • Sexual Assault Nurse Examiner does evidence collection if you want
  • Medical evaluation independent of evidence
  • Photo documentation of injuries if you consent
  • Standard physical exam

Time required

  • Often 3-6 hours total
  • More if evidence collection (rape kit)
  • Less if you decline some elements

STI prophylaxis offered

Bacterial STI prevention

Standard "antibiotic cocktail" given as single doses:

  • Ceftriaxone 500 mg IM (gonorrhea)
  • Doxycycline 100 mg twice daily for 7 days OR azithromycin 1 g single dose (chlamydia)
  • Metronidazole 2 g single dose (trichomoniasis)

This single intervention covers the most common bacterial STIs.

HIV PEP

If HIV exposure is possible:

  • 28-day antiretroviral course
  • Started within 72 hours (ideally 24)
  • Standard regimen: Truvada + Dolutegravir
  • Follow-up HIV testing at 6 weeks and 3 months
  • Side effects usually mild
  • Free or low-cost in most states (Crime Victim Compensation often covers)

See PEP eligibility.

Hepatitis B prophylaxis

  • If not previously vaccinated: HBIG + hep B vaccine within 14 days
  • If vaccinated: usually nothing additional
  • Complete vaccine series if just starting

Hepatitis C

  • No effective prophylaxis exists
  • Test at appropriate windows (12 weeks, 6 months)
  • Cure with DAAs if infected (95%+ success) — see hep C cure

Pregnancy prevention

  • Plan B (levonorgestrel) within 72 hours — over-the-counter
  • Ella (ulipristal acetate) within 120 hours — prescription
  • IUD insertion within 5 days — most effective
  • Pregnancy test at follow-up if menses delayed

HSV

  • Not routinely given prophylactic antivirals
  • Testing offered if symptoms develop
  • Most HSV exposures don't result in transmission per single exposure
  • See herpes blood test accuracy

HPV

  • HPV vaccine not generally given as post-exposure
  • Discuss with provider if you're not vaccinated and within age range

Mpox

  • Vaccine if exposure possible and within 14 days
  • Especially for high-risk encounters

Evidence collection (the "rape kit")

Optional

  • You don't have to do this to get medical care
  • Separate from reporting to police
  • Many states preserve kits anonymously so you can decide to report later

What it involves

  • Photographs of injuries
  • Swabs of mouth, vagina, anus, body
  • Pubic hair combings
  • Fingernail scrapings
  • Saliva and DNA samples
  • Clothing collection

Timeline

  • Best within 72 hours
  • Some collection possible up to 7-10 days

What happens to the kit

  • Sealed and stored
  • Can be tested for DNA if you report
  • Can be kept untested until you decide

Mental health and crisis support

At the ER

  • Crisis counselor often available
  • Confidential
  • No pressure to talk about details

After the ER

  • Referrals to specialized counselors
  • Trauma-informed care
  • Support groups
  • Local rape crisis centers

Self-care

  • Sleep, eat, hydrate (basics)
  • Don't make major decisions immediately
  • Allow yourself feelings
  • Reach out to safe people

Legal and reporting considerations

Reporting to police

  • Separate from getting medical care
  • ER can help connect you to law enforcement IF you want
  • Statute of limitations varies by state
  • Can decide later in most cases

Title IX (campus assault)

  • Different process for students
  • Campus advocacy services
  • Can be pursued in addition to or instead of criminal report

Civil cases

  • Statute of limitations often longer
  • Can be pursued separately

What if you're past 72 hours?

  • HIV PEP no longer indicated (limited evidence past 72 hours)
  • HIV PrEP can still be started for ongoing risk
  • Hepatitis B prophylaxis still has window (up to 14 days)
  • Plan B / IUD windows for pregnancy may have passed (5 days)
  • STI testing still recommended
  • Mental health support still appropriate

What if you're past 7 days?

  • All immediate prophylaxis windows are past
  • STI testing at appropriate windows still essential
  • Pregnancy testing if missed period
  • Mental health support — always available
  • Reporting still possible (different legal windows)

Follow-up appointments

2-week visit

  • Re-test for chlamydia, gonorrhea, trich
  • HIV antibody/antigen test (early)
  • Pregnancy test
  • Check HBV status

4-6 week visit

  • HIV PEP completion check
  • HIV testing
  • Mental health check
  • Pregnancy status

3-month visit

  • HIV testing (confirmed clear)
  • Syphilis testing
  • Hep C testing
  • Mental health continuing

6-month visit

  • Hep C and B status
  • Long-term mental health
  • General gynecological/reproductive care

Special situations

Sex worker survivor

  • Same comprehensive care
  • Don't have to disclose work to ER
  • Trauma-informed providers can help
  • Specific sex-worker advocacy organizations exist

Male survivors

  • Same protocols apply
  • Less common but real
  • 1in6.org for male survivors specifically
  • ER protocols accommodate male survivors

LGBTQ+ survivor

  • Affirming care available; advocate for yourself if needed
  • LGBTQ+ specific support: Trevor Project, FORGE Forward, Anti-Violence Project
  • Some ERs have LGBTQ+ trained SANE programs

Survivor with disability

  • Accommodations should be provided
  • Disability rights organizations can help
  • "End the Backlog" advocates for accessible care

Survivor who is undocumented

  • HIPAA protects medical records
  • ICE generally doesn't enter hospitals
  • Crime Victims Compensation may still apply
  • Sanctuary city services in some places

Common confusions

"If I take Plan B and don't get pregnant, I'm fine." Plan B only addresses pregnancy. STIs and HIV need separate evaluation.

"I can't get HIV from a single exposure." Single exposures can transmit HIV. PEP is recommended within 72 hours regardless of perceived probability.

"I have to report to police if I go to the ER." No. Medical care is separate. Mandatory reporting varies by state for some categories.

"Once I leave the ER, I'm on my own." No. Follow-up appointments are scheduled and crisis support is available 24/7.

"It's been too long; nothing matters now." Mental health support, STI testing, hepatitis B prophylaxis (up to 14 days), and many other interventions still apply.

Resources

Immediate crisis

  • RAINN: 1-800-656-HOPE (4673)
  • 988 Suicide and Crisis Lifeline
  • Trevor Project (LGBTQ+): 1-866-488-7386

Long-term support

  • National Sexual Assault Hotline: 1-800-656-4673
  • Local rape crisis centers (search "rape crisis center [your city]")
  • Specialized trauma therapists
  • Online support communities

Legal advocacy

  • Local victims advocate (often at ER)
  • District Attorney victim advocacy programs
  • National Crime Victim Bar Association
  • Title IX coordinator (for students)

Bottom line

After sexual assault, the medical system has a protocol that includes:

  • STI prophylaxis (single antibiotic dose covers bacterial STIs)
  • HIV PEP (28-day course within 72 hours)
  • Hepatitis B prophylaxis (within 14 days)
  • Pregnancy prevention (Plan B / Ella / IUD)
  • Evidence collection (optional, "rape kit")
  • Mental health support (immediate + ongoing)
  • Follow-up appointments at 2 weeks, 4-6 weeks, 3 months, 6 months

You don't have to know the system. You just have to get to an ER. They handle the rest.

What happened is not your fault. Help is here. You're not alone.


For more on related topics, see PEP eligibility, STI testing window periods, mental health after STI diagnosis, and condom broke 72-hour action plan.